OMAT1P105620
with_AGI_gene
<html><body><title>OMAT1P105620</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u101056200000i/OMAT1P105620.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u101056200000i/OMAT1P105620.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u101056200000i/OMAT1P105620.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500000700000i">OMAT5P000070</a></td><td>0.99078</td><td>-</td><td>AT5G01225</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300097400000i">OMAT3P009740</a></td><td>0.98433</td><td>-</td><td>AT3G25950</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301010600000i">OMAT3P101060</a></td><td>0.983943</td><td>-</td><td>AT3G03530</td><td>NPC4 (NONSPECIFIC PHOSPHOLIPASE C4)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300081800000i">OMAT3P008180</a></td><td>0.978857</td><td>-</td><td>AT3G21520</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300011700000i">OMAT3P001170</a></td><td>0.971488</td><td>-</td><td>-</td><td>-</td><td>AT3G03530</td><td>NPC4 (NONSPECIFIC PHOSPHOLIPASE C4)</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100038200000i">OMAT1P003820</a></td><td>0.971418</td><td>-</td><td>-</td><td>-</td><td>AT1G11190</td><td>BFN1 (BIFUNCTIONAL NUCLEASE I)</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200066600000i">OMAT2P006660</a></td><td>0.971211</td><td>-</td><td>-</td><td>-</td><td>AT2G29090</td><td>CYP707A2</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101003900000i">OMAT1P100390</a></td><td>0.965085</td><td>-</td><td>AT1G02310</td><td>glycosyl hydrolase family protein 5 / cellulase family protein / (1-4)-beta-mannan endohydrolase, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101191900000i">OMAT1P119190</a></td><td>0.957611</td><td>-</td><td>-</td><td>-</td><td>AT1G74720</td><td>C2 domain-containing protein</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200077500000i">OMAT2P007750</a></td><td>0.955486</td><td>-</td><td>AT2G32190</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101043200000i">OMAT1P104320</a></td><td>-0.771776</td><td>-</td><td>AT1G13440</td><td>GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300152900000i">OMAT3P015290</a></td><td>-0.760694</td><td>-</td><td>AT3G55440</td><td>TPI (TRIOSEPHOSPHATE ISOMERASE)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101029900000i">OMAT1P102990</a></td><td>-0.744801</td><td>-</td><td>AT1G09620</td><td>ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400022000000i">OMAT4P002200</a></td><td>-0.677192</td><td>-</td><td>AT4G09000</td><td>14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201124700000i">OMAT2P112470</a></td><td>-0.665668</td><td>-</td><td>AT2G47900</td><td>AtTLP3 (TUBBY LIKE PROTEIN 3)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101023900000i">OMAT1P102390</a></td><td>-0.662191</td><td>-</td><td>AT1G07770,AT1G07780</td><td>[AT1G07770]RPS15A (ribosomal protein s15a), [AT1G07780]PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501055600000i">OMAT5P105560</a></td><td>-0.661837</td><td>-</td><td>AT5G19010</td><td>MPK16</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200129000000i">OMAT2P012900</a></td><td>-0.658898</td><td>-</td><td>AT2G45810</td><td>DEAD/DEAH box helicase, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101141300000i">OMAT1P114130</a></td><td>-0.65849</td><td>-</td><td>AT1G56590</td><td>clathrin adaptor complexes medium subunit family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500093600000i">OMAT5P009360</a></td><td>-0.654237</td><td>-</td><td>AT5G27770</td><td>60S ribosomal protein L22 (RPL22C)</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u101056200000i/OMAT1P105620-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006629</td><td>lipid metabolic process</td><td>13/200</td><td>2.99</td><td>1.34e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044283</td><td>small molecule biosynthetic process</td><td>12/200</td><td>2.64</td><td>7.02e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0005975</td><td>carbohydrate metabolic process</td><td>13/200</td><td>2.50</td><td>8.12e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009719</td><td>response to endogenous stimulus</td><td>12/200</td><td>2.33</td><td>2.17e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0009725</td><td>response to hormone stimulus</td><td>11/200</td><td>2.33</td><td>3.03e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0042221</td><td>response to chemical stimulus</td><td>20/200</td><td>1.75</td><td>5.25e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0010033</td><td>response to organic substance</td><td>13/200</td><td>1.94</td><td>7.65e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>48/200</td><td>1.98</td><td>1.04e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>115/200</td><td>1.26</td><td>3.24e-04</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>19/200</td><td>2.25</td><td>3.28e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0043169</td><td>cation binding</td><td>26/200</td><td>1.81</td><td>1.17e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0043167</td><td>ion binding</td><td>26/200</td><td>1.81</td><td>1.17e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016787</td><td>hydrolase activity</td><td>27/200</td><td>1.73</td><td>1.90e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0046872</td><td>metal ion binding</td><td>24/200</td><td>1.77</td><td>2.35e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>133/200</td><td>1.22</td><td>1.65e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0020091</td><td>male gametophyte</td><td>104/200</td><td>1.25</td><td>1.03e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009026</td><td>sporophyll</td><td>111/200</td><td>1.23</td><td>1.13e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0006001</td><td>phyllome</td><td>122/200</td><td>1.19</td><td>2.24e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>124/200</td><td>1.18</td><td>2.31e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>123/200</td><td>1.18</td><td>2.75e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009047</td><td>stem</td><td>101/200</td><td>1.20</td><td>7.20e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>125/200</td><td>1.19</td><td>1.51e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>117/200</td><td>1.21</td><td>1.77e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>49/200</td><td>3.73</td><td>1.16e-16</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>42/200</td><td>2.78</td><td>3.46e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>petal</td><td>-</td><td>41/200</td><td>2.81</td><td>4.03e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>41/200</td><td>2.79</td><td>5.04e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>stage</td><td>-</td><td>48/200</td><td>2.48</td><td>8.13e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>48/200</td><td>2.03</td><td>4.65e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>48/200</td><td>1.98</td><td>9.60e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>visible</td><td>-</td><td>14/200</td><td>3.78</td><td>5.50e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>globular</td><td>-</td><td>12/200</td><td>3.20</td><td>1.14e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>leaves</td><td>-</td><td>14/200</td><td>2.83</td><td>1.50e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>metabolic</td><td>-</td><td>23/200</td><td>2.00</td><td>5.28e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>process</td><td>-</td><td>35/200</td><td>1.71</td><td>5.81e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hydrolase</td><td>-</td><td>16/200</td><td>2.19</td><td>1.12e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>glycosyl</td><td>-</td><td>11/200</td><td>2.58</td><td>1.30e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>synthase</td><td>-</td><td>11/200</td><td>2.51</td><td>1.65e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>carbohydrate</td><td>-</td><td>10/200</td><td>2.55</td><td>2.10e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>putative</td><td>-</td><td>34/200</td><td>1.47</td><td>8.00e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
0.64296699999999995523